Analysis Type:	PANTHER Enrichment Test (release 20220712)
Annotation Version and Release Date:	Reactome version 65 Released 2021-10-01
Analyzed List:	SDE_Symptomatic_Day_19_vs_Day_18.txt (Sus scrofa)
Correction:	BONFERRONI
Bonferroni count:	1178
Reactome pathways	number	overUnder	pvalue
Metabolism of RNA (R-SSC-8953854)	170	+	0.00E00
Processing of Capped Intron-Containing Pre-mRNA (R-SSC-72203)	90	+	0.00E00
mRNA Splicing (R-SSC-72172)	66	+	0.00E00
mRNA Splicing - Major Pathway (R-SSC-72163)	64	+	0.00E00
Immune System (R-SSC-168256)	442	+	6.66E-11
Innate Immune System (R-SSC-168249)	236	+	1.60E-07
Cellular responses to stimuli (R-SSC-8953897)	151	+	1.30E-06
Cellular responses to stress (R-SSC-2262752)	151	+	1.30E-06
Neutrophil degranulation (R-SSC-6798695)	133	+	1.34E-06
Gene expression (Transcription) (R-SSC-74160)	350	+	1.36E-05
Unclassified (UNCLASSIFIED)	2657	-	1.59E-05
Adaptive Immune System (R-SSC-1280218)	222	+	1.66E-05
Transport of Mature Transcript to Cytoplasm (R-SSC-72202)	35	+	6.38E-05
Membrane Trafficking (R-SSC-199991)	141	+	8.96E-05
Vesicle-mediated transport (R-SSC-5653656)	147	+	9.16E-05
Transport of Mature mRNA derived from an Intron-Containing Transcript (R-SSC-159236)	33	+	1.43E-04
TCR signaling (R-SSC-202403)	30	+	4.51E-04
Metabolism of proteins (R-SSC-392499)	339	+	6.13E-04
Cytokine Signaling in Immune system (R-SSC-1280215)	96	+	6.91E-04
Class I MHC mediated antigen processing & presentation (R-SSC-983169)	110	+	7.21E-04
Regulation of HSF1-mediated heat shock response (R-SSC-3371453)	30	+	7.25E-04
Regulation of mRNA stability by proteins that bind AU-rich elements (R-SSC-450531)	29	+	8.08E-04
Antigen processing: Ubiquitination & Proteasome degradation (R-SSC-983168)	100	+	1.66E-03
Cell Cycle (R-SSC-1640170)	218	+	2.72E-03
Cellular response to heat stress (R-SSC-3371556)	38	+	2.91E-03
Signal Transduction (R-SSC-162582)	545	+	2.92E-03
C-type lectin receptors (CLRs) (R-SSC-5621481)	28	+	3.03E-03
RHO GTPase cycle (R-SSC-9012999)	118	+	3.10E-03
Deubiquitination (R-SSC-5688426)	68	+	3.41E-03
RNA Polymerase II Transcription Termination (R-SSC-73856)	23	+	3.62E-03
Downstream TCR signaling (R-SSC-202424)	28	+	3.82E-03
Transcriptional Regulation by TP53 (R-SSC-3700989)	88	+	4.71E-03
Signaling by Interleukins (R-SSC-449147)	68	+	5.42E-03
M Phase (R-SSC-68886)	140	+	7.18E-03
Post-translational protein modification (R-SSC-597592)	283	+	7.21E-03
mRNA 3'-end processing (R-SSC-72187)	22	+	7.97E-03
mRNA Splicing - Minor Pathway (R-SSC-72165)	17	+	1.36E-02
Signaling by Rho GTPases (R-SSC-194315)	189	+	1.71E-02
CLEC7A (Dectin-1) signaling (R-SSC-5607764)	25	+	1.75E-02
Signaling by Rho GTPases, Miro GTPases and RHOBTB3 (R-SSC-9716542)	194	+	2.54E-02
Interleukin-3, Interleukin-5 and GM-CSF signaling (R-SSC-512988)	12	+	3.99E-02
RNA Polymerase II Transcription Elongation (R-SSC-75955)	20	+	4.83E-02
Formation of RNA Pol II elongation complex  (R-SSC-112382)	20	+	4.83E-02
Signaling by NTRKs (R-SSC-166520)	21	+	4.83E-02
